- utils/nnet/make_nnet_proto.py : adding comments



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trunk: make wav-reading code produce truncated wav file when data ends early, and avoid memory blow-up if header gives huge size (e.g. when reading from sox in a pipe)

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(Fisher-Callhome-Spanish) : Modified license for spron.pl. Segments with the same start and end time do not get added to the segments file anymore

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trunk: some improvements to the cuda-matrix library: improve speed of TraceMatMat; better GPU-time logging from cu-device.cc.

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(trunk/egs/gale_arabic) Various fixes and improvements of the recipe. Added possibility to add more corpora easily, GALE 2014 for example.

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trunk: fixing phone mismatch in proxy search -- those fixes were checked in to another branch in April but somehow were not merged to trunk; I'm committing again here to trunk.

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trunk: re-creating s5c (copying from the latest s5b scripts). All further Babel changes should be made into s5c so that s5b can reflect JHU's Babel performance in April, 2014.

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trunk: changing the lattice-align-words algorithm from breadth first to depth first, so that it can output partial results when it hits the maximum required states. This will likely make lattice-align-words slower. Also changed the default --max-expend value in steps/make_index.sh from 30 to 180. This will also make the indexing a bit slower, but will give better results since it reduces the number of failed utterances.

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trunk: various small unrelated minor improvements: include copying tree to online-nnet2 directory; remove outdated assert

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- nnet-loss.cc - simplicfications of old code
- lattice-to-ctm-conf.cc - print average confidence per-sentence,
- steps/nnet/train.sh - use /tmp for local caching of features, or override by copy_feats_rootdir,



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trunk: changes to babel scripts: 1. using train_pnorm_fast.sh instead of train_pnorm.sh; 2. removing unused script for extended lexicon. Both tested.

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Includes fixes for
- compiler errors due to unqualified type names,
- compiler warnings related to const correctness and uninitialized variables,
- and a few other bugs.

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